PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901276.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 181aa MW: 20374.9 Da PI: 8.2973

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	33.2	1.4e-10	1	52	45	96
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 ++k+++ee+r++a++slv+eA++r++dPv G ++ ++k+ ++l+ k+e ++ XP_015901276.1 1 MVKNIREEDRRRAVDSLVWEACCRQKDPVLGPYSEYKKVYEELKMYKSEENQ 52 689999**************************************99988665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.985	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-8	1	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVKNIREEDR RRAVDSLVWE ACCRQKDPVL GPYSEYKKVY EELKMYKSEE NQMLQLTGQK 60 NTISYKSLSS LVARNNGGHG ISSNGTGVGG VVSSNGFNYF HESGNVLVEP STFGYPSNYM 120 QLCSEKTRGE KNIDSVVPLQ QHLVSGGFNQ QYYHSGNLVC YYLMNHTILL SHFLASNIKS 180 L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901276.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881257.2	1e-112	LOB domain-containing protein 2-like
Refseq	XP_015901276.2	1e-112	LOB domain-containing protein 2-like
TrEMBL	A0A2P5E7R6	3e-41	A0A2P5E7R6_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_008229134.1	9e-35	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12722	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-17	LOB domain-containing protein 2