PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900773.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 566aa    MW: 64279.7 Da    PI: 7.3399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12112152445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W+ +a+++g +++  qc+++++
   XP_015900773.1 112 WNADEESLLLEGIEMYGYGNWSEVAEHVG-TKSKAQCIDHYN 152
                      *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.5E-15740566IPR016827Transcriptional adaptor 2
SMARTSM002913.1E-104893IPR000433Zinc finger, ZZ-type
PfamPF005692.4E-95284IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.6445295IPR000433Zinc finger, ZZ-type
CDDcd023351.25E-2452100No hitNo description
SuperFamilySSF578506.95E-1552115No hitNo description
PROSITE patternPS0135705481IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.2E-12107158IPR009057Homeodomain-like
PROSITE profilePS5129321.579107159IPR017884SANT domain
SMARTSM007171.1E-10108157IPR001005SANT/Myb domain
PfamPF002492.9E-12111152IPR001005SANT/Myb domain
CDDcd001671.63E-11112152No hitNo description
Gene3DG3DSA:1.10.10.601.9E-9112154IPR009057Homeodomain-like
SuperFamilySSF466896.45E-20473562IPR009057Homeodomain-like
PROSITE profilePS509349.847479566IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGRSRAVSRA ADDDPNQRSK RKRPASGAEP IEITSYNTVL GQGNSEPKGA LYHCNYCNKD  60
ISGKIRIKCV ICPNFDLCIE CFSVGAEVTP HNSKHPYRVM DNLAFPLICP DWNADEESLL  120
LEGIEMYGYG NWSEVAEHVG TKSKAQCIDH YNAIYMNSPF FPLPDLSHVM GKTREELLTM  180
AKEIKKEAPM LGEVPVEEES LRYNESKKGP IPQSSARSTS EVGTGPVFGA VKKTSNRTQI  240
NHEAKAEESQ VETQVDRSIG EKKPRSLGDE RPSMMELSGY NFKRQEFEIE YDNDAEQLLA  300
DMDFKDSDTS AERELKLRVL HIYSKRLDER KRRKDFILER NLLYPDPIEK NLSPEEKEIY  360
QRYKVFMRFH SKKEHEEFIK NIIEEHRIVK RIQDLQQARA AGCRTANEAN RFIEQKRKRE  420
TEESALRIKE SSQAGPSGKG LQKPNHVKGE ADCNSPRGLA RGSTSLHLGG KESTLTTQPI  480
IASSLDNWDI SGLRGSELIS DTEKQLCNEI RILPSHYLNM LQIISTEMWK GNVTKKSDAY  540
SLFKVEPSKV DKVYDMVMKK GITTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E1e-36521675120Transcriptional adapter 2
6cw3_G1e-36521675120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329334RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900773.10.0transcriptional adapter ADA2-like isoform X2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2P5C2280.0A0A2P5C228_TREOI; Transcriptional adapter
STRINGXP_010104082.10.0(Morus notabilis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]