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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 567aa MW: 64350.8 Da PI: 7.3399 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 112 | 152 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g +++ qc+++++ XP_015900772.1 112 WNADEESLLLEGIEMYGYGNWSEVAEHVG-TKSKAQCIDHYN 152 *****************************.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 4.9E-157 | 40 | 567 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 3.1E-10 | 48 | 93 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 2.4E-9 | 52 | 84 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 1.26E-24 | 52 | 100 | No hit | No description |
PROSITE profile | PS50135 | 10.644 | 52 | 95 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 6.95E-15 | 52 | 115 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 54 | 81 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.2E-12 | 107 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.579 | 107 | 159 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-10 | 108 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 111 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.59E-11 | 112 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 112 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-20 | 474 | 563 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 9.847 | 480 | 567 | IPR007526 | SWIRM domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MGRSRAVSRA ADDDPNQRSK RKRPASGAEP IEITSYNTVL GQGNSEPKGA LYHCNYCNKD 60 ISGKIRIKCV ICPNFDLCIE CFSVGAEVTP HNSKHPYRVM DNLAFPLICP DWNADEESLL 120 LEGIEMYGYG NWSEVAEHVG TKSKAQCIDH YNAIYMNSPF FPLPDLSHVM GKTREELLTM 180 AKEIKKAEAP MLGEVPVEEE SLRYNESKKG PIPQSSARST SEVGTGPVFG AVKKTSNRTQ 240 INHEAKAEES QVETQVDRSI GEKKPRSLGD ERPSMMELSG YNFKRQEFEI EYDNDAEQLL 300 ADMDFKDSDT SAERELKLRV LHIYSKRLDE RKRRKDFILE RNLLYPDPIE KNLSPEEKEI 360 YQRYKVFMRF HSKKEHEEFI KNIIEEHRIV KRIQDLQQAR AAGCRTANEA NRFIEQKRKR 420 ETEESALRIK ESSQAGPSGK GLQKPNHVKG EADCNSPRGL ARGSTSLHLG GKESTLTTQP 480 IIASSLDNWD ISGLRGSELI SDTEKQLCNE IRILPSHYLN MLQIISTEMW KGNVTKKSDA 540 YSLFKVEPSK VDKVYDMVMK KGITTSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 1e-36 | 52 | 167 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 1e-36 | 52 | 167 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 330 | 335 | RKRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900772.1 | 0.0 | transcriptional adapter ADA2-like isoform X1 | ||||
Refseq | XP_024923007.1 | 0.0 | transcriptional adapter ADA2-like isoform X1 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A2P5C228 | 0.0 | A0A2P5C228_TREOI; Transcriptional adapter | ||||
STRING | XP_010104082.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1537 | 17 | 26 |
Publications ? help Back to Top | |||
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