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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 693aa MW: 80330.1 Da PI: 6.6055 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.1 | 3.6e-24 | 72 | 163 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s+ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHel XP_015900730.1 72 EYYSNFARKNGFSIRKARSTESQSLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 163 69********************8888.******************************************998766789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-22 | 72 | 163 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-23 | 295 | 388 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.262 | 566 | 602 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.5E-8 | 570 | 602 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.7E-5 | 577 | 604 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQVSVSSQHV KTEMIPSSSS SSEAVFTPYV 60 GQIFKSDDDA FEYYSNFARK NGFSIRKARS TESQSLGIYR RDFVCYRSGF NQPRKKANVE 120 HPRERKSVRC GCDAKLYLTK EIVDGVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQEA 180 DQERILLLSK AGFPVNRIVK VLELEKGVQP GHLPFIEKDV RNFVRTCKKT VQENDALLSE 240 KRENDTLEFL ETCKAMAERD PDFIYDYTTD ENEKVENIAW SYGNSVRAFT VFGDVVSFDT 300 TYRSITYGLL LGVWFGIDSH GKAILFGCVL LQDESSHSLS WALQTFVRFM RGRHPQTILT 360 DIDSGLRDAI VSELPNTKHV ICIWHVLSKI SSWFSLPLGS KYADFKAEFD MLCHLESIED 420 FEHQWNLLVA RFGLVSDKHV ALLYSYRTFW PFSYIRSYFV ARMVTAEFSQ SLESFFKRIL 480 GTQTCLQAFF EQVTNAANFG NQTRESMQYS HIKTCMPIEE HARTVLTPYA FHVLQHEIVL 540 SMQYETTEMA SGSHLVRHYK KMDGEYLVIW IPDDEQIHCS CKEFEHSGIL CRHSLRVLLV 600 KNYFQLPDRY FLLRWRLESS LVPFDEHNLQ DSSVDYAQAF HALASNLLTE SLISKERFSF 660 VHRELSGILE RVRSMPVTDE YALNLAANNV SES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900729.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_015900730.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A2I4DP38 | 0.0 | A0A2I4DP38_JUGRE; Uncharacterized protein | ||||
STRING | XP_006469463.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447802.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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