PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900633.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 793aa    MW: 89890.6 Da    PI: 7.3579
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.45.1e-2349134290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA +vGFs+rk k ++ + +++i +r++ Cskeg++ +e+ +  +++ +r  trtgCka ++ ++e dg w+v  ++ +HnHela
  XP_015900633.1  49 LYNAYALRVGFSIRKGKVRYFTGSKKIRSREYFCSKEGFKLDEDLE--EKKVRRLDTRTGCKAFVRFSNE-DGLWKVVAFNPQHNHELA 134
                     6*****************************************9988..89999***************99.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2049134IPR004330FAR1 DNA binding domain
PfamPF105511.5E-32236329IPR018289MULE transposase domain
PROSITE profilePS509669.285514552IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-5526548IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-6527554IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MASNINSKPG VHTLSDVEET GDMELGTQVG EDDNLMGKVV NSEDEAYALY NAYALRVGFS  60
IRKGKVRYFT GSKKIRSREY FCSKEGFKLD EDLEEKKVRR LDTRTGCKAF VRFSNEDGLW  120
KVVAFNPQHN HELAMPSEKH LLKSARRMPI SKAHVPGVEG FGDIGFVNRD CYTYMNRQKT  180
LMSAGDSQNL LNLFKSKQAE DSLFFYTVQV DQENRITNFF WRDGRSRLDY DCFGDVLAFD  240
TTCRTNKYNL ICAPFVGVNH HWQNVMFGCA FMLDETTTSF EWLFKSFLES MGNRPPKTIL  300
TDHNQAISNA IEIVFPNTRH CLCRWHILKS VASQVGDLSE NSEFKYLFNK CLTGCEEAAD  360
FQQSWDNLIQ KYNIGNHKWF NTLYEVRAKW STAFTKDVFT GGISSSQRSE STGNVLVGLA  420
NDITSLSKFV IAYEKLVASM RSSEFNEDFR CKQGAQSKVL KKSGILGQAS NVYTNKIYKL  480
FEEELLGSIG TTWTELVSRD TLHTFEVREE GSQRVCTVKF NSHSAEIFCS CKKFESLGIL  540
CCHALRVFGI KNLTRIPNQY VLKRWTKEAK GGMMGYEQSA PHSMNRKDEL VWRNSMIRFV  600
CNSIYKAQGM DTARKLCIKK LLEFDREIDE EVARLKLGEE RNLGTDIANE GNDACTPVLC  660
PSHMEDLSST RHKGHCEKRK TNPSKEAISA GKSKQSSHPI LLPSIDINSR SQSNSLCDQH  720
HMYPNAPLST HTQESSTNVL SVSYDFSQSG SVSRTEIMEP TVNTNCEIFP SMGQFMLESE  780
NTGGDEESGI VPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898134.20.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_015898136.20.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_015898137.20.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_015900632.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_015900633.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_024922293.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2N9ET880.0A0A2N9ET88_FAGSY; Uncharacterized protein
STRINGXP_008787110.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5