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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 269aa MW: 30733.7 Da PI: 6.68 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.3 | 3.3e-14 | 79 | 131 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr llP + + kKls +++ ++ +YI +Lq XP_015900575.1 79 KKLNHNASERDRRKKINHLYSSLRALLPAtD---HTKKLSIPATVSRVLKYIPDLQ 131 6789*************************55...7777***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.694 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-12 | 79 | 135 | No hit | No description |
Pfam | PF00010 | 1.4E-11 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-13 | 79 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 79 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 84 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MLALSPPLFP SFGWPLELDP INQDHQINDC FYGDHQCTET TSESFLHFPV PSELPQQLDQ 60 LDRSTPSTTA ISSDLNMVKK LNHNASERDR RKKINHLYSS LRALLPATDH TKKLSIPATV 120 SRVLKYIPDL QQQVEGLVRK KEELLSKMSK QKGNLVHHDD DQENQVKTAA ARSSLSSVSA 180 TQLNDREVAI QISTYKVNNN PISEILNTLE EDGFSMLNAS SFESFEGRVF HSLHLQVERY 240 SMECEMLEEL KIRNLAFKKK KKFSTDEYK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024922954.1 | 0.0 | transcription factor ORG2-like isoform X1 | ||||
TrEMBL | A0A2P5ETM5 | 6e-98 | A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_004290411.1 | 2e-87 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-57 | bHLH family protein |