![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015900464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38744.2 Da PI: 5.0119 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.7e-10 | 274 | 314 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k +q XP_015900464.1 274 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFMQ 314 9******************97.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-13 | 264 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.551 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-12 | 269 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-11 | 273 | 318 | No hit | No description |
Pfam | PF00010 | 3.1E-7 | 274 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MEFLGAFPDG EWDSLGKMFS TEELEFMPHF LGQFSFPLDH NEGLNLGPST FCPNSEATMG 60 LDGVNESLFH SLDSFNSNMH YISQESSFSS CATPTQRSYN FSDSYQIPVI DNISMDVCMM 120 DETNVGSYIP AFTDIVMGET VCIKQYDGSP DQTVSVNELQ LKRKYDVCTG AEDKSIDTDS 180 TPQNLKKKPR VSRKVPKSKK RAGSKKRQKQ ASNGKDEESN TQSTSSYSSE DDNASLESNG 240 GLTSDTKPSA AVNLNGKTRA SRGSATDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS 300 TMLEEAVHYV KFMQLQIKLL SSEDLWMYAP IAYNGVDIGF NQKISPLL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015900464.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885026.1 | 0.0 | transcription factor bHLH85-like | ||||
Refseq | XP_015900464.1 | 0.0 | transcription factor bHLH85-like | ||||
TrEMBL | M5XIA2 | 1e-133 | M5XIA2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220363.1 | 1e-134 | (Prunus mume) | ||||
STRING | EMJ25231 | 1e-134 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-45 | bHLH family protein |