PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015900231.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 398aa MW: 46294.1 Da PI: 8.8832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015900231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.3e-21	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GFsvr s++k+ k +e+++++fvC keg ++ ++ + ++r r tr +Ckak+ v ++k gk+++t +++eH+H+l+ XP_015900231.1 55 EFYIKYAKEAGFSVRSSSTKRCKGMNEVVRKEFVCFKEGVSSIKDGE---RKRFRGMTRKNCKAKVAVVMSKMGKFVITVFVEEHSHPLS 141 6***************************************99877...99999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-19	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-31	246	339	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSVEQLEANS DCRLVEDISF LSHSKFVDNV YIPQVTKNCK PKVGQEFESI DGAHEFYIKY 60 AKEAGFSVRS SSTKRCKGMN EVVRKEFVCF KEGVSSIKDG ERKRFRGMTR KNCKAKVAVV 120 MSKMGKFVIT VFVEEHSHPL STLRKVHLLR SYRSVSEAKK SLTMQFSAAN VPIHQQISIL 180 EVEAGAKVRN ELRGQDAELL KEYFLAKQEK DPYFFFKIDV DDDGKLKCCF WVDSVSRRAY 240 GCFGDVVVFD TTYNTNQYGM IFAPLVGVNN HGQTVLFAYA FLNDERTESF VWLFERLKDS 300 MPTNNPKMII IDQDPAMTKA IAQSLRNTFH RYCSWHLLEK FSTYLNAITY RDFYKDFQQC 360 IWKSKFLEES ERKWVTTIEK ASLYDNDWLK SIFELRSR

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSVEQLEANS DCRLVEDISF LSHSKFVDNV YIPQVTKNCK PKVGQEFESI DGAHEFYIKY  60
AKEAGFSVRS SSTKRCKGMN EVVRKEFVCF KEGVSSIKDG ERKRFRGMTR KNCKAKVAVV  120
MSKMGKFVIT VFVEEHSHPL STLRKVHLLR SYRSVSEAKK SLTMQFSAAN VPIHQQISIL  180
EVEAGAKVRN ELRGQDAELL KEYFLAKQEK DPYFFFKIDV DDDGKLKCCF WVDSVSRRAY  240
GCFGDVVVFD TTYNTNQYGM IFAPLVGVNN HGQTVLFAYA FLNDERTESF VWLFERLKDS  300
MPTNNPKMII IDQDPAMTKA IAQSLRNTFH RYCSWHLLEK FSTYLNAITY RDFYKDFQQC  360
IWKSKFLEES ERKWVTTIEK ASLYDNDWLK SIFELRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015900231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900231.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-148	A0A067D5X9_CITSI; Uncharacterized protein
STRING	Aquca_050_00023.1	1e-132	(Aquilegia coerulea)
STRING	XP_004297991.1	1e-132	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-68	FAR1-related sequence 5