PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900105.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 347aa    MW: 38753.7 Da    PI: 6.7935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-182875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_015900105.1 28 RGPWTVEEDLTLINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding51.13e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_015900105.1  81 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4622375IPR017930Myb domain
SuperFamilySSF466891.2E-3025122IPR009057Homeodomain-like
SMARTSM007172.7E-152777IPR001005SANT/Myb domain
PfamPF002497.0E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-232982IPR009057Homeodomain-like
CDDcd001671.84E-123075No hitNo description
PROSITE profilePS5129423.24676130IPR017930Myb domain
SMARTSM007171.3E-1480128IPR001005SANT/Myb domain
PfamPF002496.1E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2383129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDVKGRSSIS VCNDTDILQN DEDLDLRRGP WTVEEDLTLI NYIANHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQHL PGRTDNEIKN  120
YWRTRVQKHA KQLKCDVNSK QFKDTMRYLW MPRLVERIQA ASASASVSVS SSVTGTGPSP  180
VPSTTGITAS SHHHHLFNNH NNNNNSGFRS SGQFVLPKTS IGNDFGGSQV TPSYTPDNSS  240
TAASSDSFGT PVSDLTDYYS AIPINNNHPN PDNYFQAGYG GGGQVGNYSE SMTSPAAAGY  300
YNPGLDFQAM DQININNWMD SDDASDSLWN VEDIWFLQPH HLNTTNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25251284106B-MYB
1gv2_A2e-25251281103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900105.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867281.10.0transcription factor MYB108-like
RefseqXP_015900105.10.0transcription factor MYB108
SwissprotQ9FGY31e-94MYB78_ARATH; Transcription factor MYB78
TrEMBLB9HX621e-142B9HX62_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-89myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]