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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_015900016.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 667aa MW: 72807.5 Da PI: 5.9114 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.3 | 8e-29 | 204 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
XP_015900016.1 204 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 257
79*******************.********************************8 PP
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| 2 | Response_reg | 73.8 | 6.5e-25 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ + +l+++l+ y ev+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + G
XP_015900016.1 26 VLVVDDDPTCLVILEKMLRTCLY-EVTKCNRAEIALSMLRENKngYDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVTHG 118
89*********************.***************999999**********************6654.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l++
XP_015900016.1 119 ACDYLIKPVRIEALRN 134
*************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.7E-177 | 6 | 658 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 6.3E-42 | 23 | 172 | No hit | No description |
| SuperFamily | SSF52172 | 1.71E-34 | 23 | 152 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 2.5E-29 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 2.4E-22 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.09E-26 | 27 | 139 | No hit | No description |
| SuperFamily | SSF46689 | 3.58E-20 | 201 | 261 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.048 | 201 | 260 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-30 | 203 | 262 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.5E-25 | 204 | 257 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.5E-8 | 206 | 256 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 667 aa Download sequence Send to blast |
MSTASSSAAW KAGDVVSDQF PVGLRVLVVD DDPTCLVILE KMLRTCLYEV TKCNRAEIAL 60 SMLRENKNGY DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKNV VMKGVTHGAC 120 DYLIKPVRIE ALRNIWQHVV RKKKNERKEL EQSGSFEDGD RQAKASEDAD YSSSANEGNW 180 KSSKKRKDEE EETEDRDDTS TLKKPRVVWS VELHQQFVAA VNQLGIDKAV PKKILELMNV 240 PGLTRENVAS HLQKYRLYLR RLSGVSQHQG GLSNSFISSS ESTFGPVTSI NQMDLLNPGQ 300 FQAQNISTYQ AAGLGRSPAK SGLPMPLGDQ RNLFSFENPK LRFGEGQQQH MTSSKSMNLL 360 HGIPTAMEPK QLANLHQSAQ ALGGVNLQVN GHGAQNNNLL IQMAQQHSRG PILNEATGGH 420 VPRLPSSMGQ PIVSNGIPGG VLGRNGIADG GRGAGYNPIL QSSSLLNFPL NHTPDLPGNS 480 FPLGSTPGLS SLTSKGTFPD EVTSDIKGSA GFVPSYDIFN DLNQHKSNDW DIQNVGMTFD 540 ASQHSNSMQG SLDVSSSILV HQGFSSNQGS LQNRNQCNVS KATFSMGDGI DHGNTQNMNQ 600 HLNTLLGDNS IRVKTERVTD AGSQTTFFPE QFGPEDLMSA LLKQQEDIQP SENEFGFDGY 660 SMDNIPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 203 | 263 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_015900016.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015900016.1 | 0.0 | two-component response regulator ARR1 isoform X1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | M5XK84 | 0.0 | M5XK84_PRUPE; Two-component response regulator | ||||
| STRING | EMJ26354 | 0.0 | (Prunus persica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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