PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899738.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 430aa    MW: 46592.7 Da    PI: 9.9437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-184188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l ++vk++G g+W+++ r  g++R++k+c++rw ++l
   XP_015899738.1 41 KGPWTAAEDQILMEYVKKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding51.81.9e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_015899738.1  94 KGAFTQEEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 137
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6473688IPR017930Myb domain
SMARTSM007171.5E-154090IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-3140135IPR009057Homeodomain-like
PfamPF002492.9E-164188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-244295IPR009057Homeodomain-like
CDDcd001675.78E-124388No hitNo description
PROSITE profilePS5129426.34889143IPR017930Myb domain
SMARTSM007175.8E-1793141IPR001005SANT/Myb domain
PfamPF002491.5E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2596142IPR009057Homeodomain-like
CDDcd001679.40E-1396137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MTNINGSAMS EGGSSGSSGG GAAGGGRGGT SNGADGIILK KGPWTAAEDQ ILMEYVKKHG  60
EGNWNSVQRN SGLNRCGKSC RLRWANHLRP NLKKGAFTQE EERLILELHA KYGNKWARMA  120
AQLPGRTDNE IKNYWNTRVK RRKRQGLPLY PNDIQQSQPT TPTSPMTPTP PTTPIIPTFS  180
FHSPSHSHSQ TLVPLSSNTP PHLSPLSSPH HHSPNSFSPS LPLFEPTTTS SFSFSSPFTF  240
QRPAPMLGTP LRFKRYRAPT AASSLPFSTN PQAAASPSQL IGGQSLSSSS SVVDMNSFQF  300
PVTYNTATAA MSQSIRPLAA AQAHQFHETD LLGSNICTLR SELPSNQLSQ MHSNITIDNT  360
LSSGTNQRSC ELMEDLLDET HHGLAFNGES SRRASSSGYG SKEGKRVLDA FSLWESSSSY  420
NSSSGHRLEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-33391425107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899738.10.0transcription factor MYB120-like isoform X2
TrEMBLA0A498IL281e-104A0A498IL28_MALDO; Uncharacterized protein (Fragment)
TrEMBLA0A498INQ01e-106A0A498INQ0_MALDO; Uncharacterized protein
STRINGXP_008385966.11e-107(Malus domestica)
STRINGXP_008385967.11e-107(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.12e-66myb domain protein 120