PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899726.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 306aa    MW: 34364.5 Da    PI: 6.5117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-144186148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_015899726.1 41 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 86
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-92246IPR009057Homeodomain-like
SuperFamilySSF466896.27E-212294IPR009057Homeodomain-like
PROSITE profilePS500904.1352235IPR017877Myb-like domain
PROSITE profilePS5129423.0443690IPR017930Myb domain
SMARTSM007173.5E-134088IPR001005SANT/Myb domain
PfamPF002495.1E-134186IPR001005SANT/Myb domain
CDDcd001672.93E-94386No hitNo description
Gene3DG3DSA:1.10.10.601.4E-204791IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVLEIGDQFL LTQLFFCLGL LRCSKSCRLR WTNYLRPGIK RGNFTPHEEG MIIHLQALLG  60
NKWAAIASYL PQRTDNDIKN YWNTHLKKKL KKFQTALEPQ MASDSTSTSQ FISRSLSERK  120
SLDIPNHGAS SLRLNNQQSS TYASSTENIS RLLEGWMRSS PKMPNTKGAQ VKHDKDDSVE  180
FEHISVGNPS SMPSLQCCGP KAEQEGGDLV SNEEFESILS FENLNNVSSW DRSSTCDSST  240
PNKGNSQSSV ADHEEKIVHG VSEKNKQKSA ENNNNISNPP LSFLEKWLLD ETAGQVEEMM  300
ELSPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1629018108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899726.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899726.10.0myb-related protein 306 isoform X2
SwissprotB3VTV71e-106MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1Q3BPR51e-114A0A1Q3BPR5_CEPFO; Myb_DNA-binding domain-containing protein
STRINGEOY104291e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-60myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]