PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899676.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 354aa    MW: 38536.4 Da    PI: 9.4039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1387131147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_015899676.1  87 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 131
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1681137IPR009057Homeodomain-like
PROSITE profilePS5129415.40882136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-685137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1885134IPR006447Myb domain, plants
SMARTSM007175.3E-1186134IPR001005SANT/Myb domain
PfamPF002493.0E-1187131IPR001005SANT/Myb domain
CDDcd001672.37E-889132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPMNT ALPGLDSLPA TATATTAPAT TVTATATATT TTTAPACTAS  60
TATNSTTSLA DDSNKKIRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT  120
VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK APKAPIVAHI NGPFQSSAAL  180
LEPGYVYQPD SSSVLNNPVP TAKLSWSYGS LPLVNVSQVI KDGRLSGPTM ANNCHSSSNE  240
STPRTWPTSK TIDLGDPNKA IRVMPDFAQV YSFIGSVFDP NATGHLQRLK EMDPINLETA  300
LLLMQNLATN LTSPQFEDHR RLLSLYDAVP EKAKSGSPFS FPFNSNSENA ILSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9477695e-73KU947769.1 Toxicodendron vernicifluum microsatellite c26331 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899676.10.0protein REVEILLE 5-like isoform X4
SwissprotC0SVG51e-109RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A067H3831e-171A0A067H383_CITSI; Uncharacterized protein
TrEMBLA0A2H5PGE81e-171A0A2H5PGE8_CITUN; Uncharacterized protein
TrEMBLV4TD211e-171V4TD21_9ROSI; Uncharacterized protein
STRINGXP_006491181.11e-171(Citrus sinensis)
STRINGXP_006444958.11e-171(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.22e-92MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]