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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 356aa MW: 38752.6 Da PI: 9.1995 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.8e-13 | 87 | 131 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky XP_015899672.1 87 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 131 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 81 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 82 | 136 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-18 | 85 | 134 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 85 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-11 | 87 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-8 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MVSVNPNPAQ GFYFFDPMNT ALPGLDSLPA TATATTAPAT TVTATATATT TTTAPACTAS 60 TATNSTTSLA DDSNKKIRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT 120 VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK APKGTPIVAH INGPFQSSAA 180 LLEPGYVYQP DSSSVLNNPV PTAKLSWSYG SLPLVNVSQV IKEDGRLSGP TMANNCHSSS 240 NESTPRTWPT SKTIDLGDPN KAIRVMPDFA QVYSFIGSVF DPNATGHLQR LKEMDPINLE 300 TALLLMQNLA TNLTSPQFED HRRLLSLYDA VPEKAKSGSP FSFPFNSNSE NAILSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00423 | DAP | Transfer from AT4G01280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899672.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU947769 | 5e-73 | KU947769.1 Toxicodendron vernicifluum microsatellite c26331 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899672.1 | 0.0 | protein REVEILLE 3-like isoform X1 | ||||
Swissprot | C0SVG5 | 1e-110 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A067H383 | 1e-174 | A0A067H383_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PGE8 | 1e-174 | A0A2H5PGE8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TD21 | 1e-174 | V4TD21_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491181.1 | 1e-175 | (Citrus sinensis) | ||||
STRING | XP_006444958.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 2e-93 | MYB_related family protein |
Publications ? help Back to Top | |||
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