PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899555.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 477aa    MW: 52053.8 Da    PI: 9.3015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.1e-33195250359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  XP_015899555.1 195 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHL 250
                     9***************************************.***************5 PP
2WRKY106.41.5e-33396453259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver+++dp+++++tYeg+Hnhe
  XP_015899555.1 396 SDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKHVERASDDPRAFITTYEGKHNHE 453
                     7********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-30185252IPR003657WRKY domain
SuperFamilySSF1182901.2E-25191252IPR003657WRKY domain
SMARTSM007745.0E-37193251IPR003657WRKY domain
PfamPF031061.3E-25195249IPR003657WRKY domain
PROSITE profilePS5081123.388195252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-34380455IPR003657WRKY domain
SuperFamilySSF1182901.57E-28390455IPR003657WRKY domain
PROSITE profilePS5081135.485390455IPR003657WRKY domain
SMARTSM007741.3E-38395454IPR003657WRKY domain
PfamPF031062.3E-26397453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDVKEAERIV IAKPVASRPT CSSFKSFSEL LSGAIDASPS NTSSETAVPA IRPKTVRFKP  60
TVNRAPTGLF SSQAEISGTA VCNASDMAPK SDGKSAVIYK PLAKVVSKAT VSLLATMGNF  120
SNSHQQKQPS LDSQHSKQDK YCLRSSKLSS KLHQNISSLA ETKQTIEPSK LASQNQEEDP  180
KSLPSTANSD RPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCPVKKKV ERSLDGQIAE  240
IVYKGEHNHL KPQPPRRSSS GMQGLGFVSD AAAIDTNNQL PSSHHVNERN EGSEGRLDNQ  300
NEVGLSRHSY QGGKTSQLYD SAATGGILSA GGTPDNSCGL SGECEEGSKG LEAEDDEPRS  360
KRRKGENPSN EAGTLGEGIQ EPRLVVQNNA DTEIFSDGFR WRKYGQKVVK GNPYPRSYYR  420
CTSLKCNVRK HVERASDDPR AFITTYEGKH NHEMPLRNSN PVSSEAVTLA PTGKDKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-32195455877Probable WRKY transcription factor 4
2lex_A4e-32195455877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899555.10.0WRKY transcription factor 44
TrEMBLA0A2N9IKF80.0A0A2N9IKF8_FAGSY; Uncharacterized protein
STRINGEMJ063360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-114WRKY family protein