PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SBP

Protein Properties

Length: 213aa MW: 23753.2 Da PI: 8.9434

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015899233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.5	1.7e-42	88	163	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C adls+ak+yhrrhkvCe+h kap+v+v+gl qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrr++ XP_015899233.1 88 CQAERCGADLSDAKRYHRRHKVCEFHFKAPAVIVAGLPQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRRTP 163 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.2E-34	84	149	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.949	85	162	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.45E-38	87	166	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-32	88	161	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEAGAKKLLY EGAGRQGWKE RAASNRDHED QVLEDDLSDQ EEDQTFGFGG DGGDQSSFAV 60 NDQKKKKPAT GVAATRRGCG GGGGGVGCQA ERCGADLSDA KRYHRRHKVC EFHFKAPAVI 120 VAGLPQRFCQ QCSRFHELSE FDEAKRSCRR RLAGHNERRR RTPAECFGDG SSNRKAASKE 180 REIQTTQTED HRARMQMTPP HGNSTGYKQF YIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-36	78	161	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015899233.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040, ECO:0000305\|PubMed:16914499}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024922505.1	1e-157	squamosa promoter-binding-like protein 3
Refseq	XP_024928820.1	1e-157	squamosa promoter-binding-like protein 3
Refseq	XP_024931629.1	1e-157	squamosa promoter-binding-like protein 3 isoform X1
Swissprot	Q9S7A9	3e-41	SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBL	A0A1B3IL68	3e-53	A0A1B3IL68_POPTO; Squamosa promoter-binding protein 20
STRING	XP_009340759.1	2e-53	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-42	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Hyun Y, et al. Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta, 2015. 241(1): p. 271-84 [PMID:25269397] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]