PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899006.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 840aa    MW: 93898.1 Da    PI: 4.7708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07779831346
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      +WTt E+ell ++vk++ +       W+ I +       kgRt+ ++k++w++
   XP_015899006.1 779 PWTTTEEELLMEGVKKFSSAskraiPWTEILEFGSsvflKGRTAMDLKDKWRN 831
                      8*****************99***********9888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.64E-9485536IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.6486535IPR019787Zinc finger, PHD-finger
SMARTSM002492.9E-5488533IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.101.8E-8488536IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS013590489532IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.956772833IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-10773833IPR009057Homeodomain-like
SuperFamilySSF466894.6E-10774834IPR009057Homeodomain-like
SMARTSM007172.6E-4776835IPR001005SANT/Myb domain
CDDcd116607.04E-14779834No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MDNMPDSESV AWLWVIEAIA SFKEVGPSLL YDLVKTAPKL PDNLGKNTRE RIALRCLEAL  60
FVPCNGNTSD VPSVQGSKVR FELSESCEDV LQRILQETSV SDLRTAGQEL SKWDVYPFIM  120
HKRACMREYT LGQLKDAILD GTHSYADFLG EKSGLALKKG ADRTSLKDNN SISLSFKPNQ  180
SCSDVQTVRL RGNSDPPILE NKNKELEENL HDGDRNKELE NNLHDGDILV SKRGRVNFSN  240
ADLASCDDHY NIDDSNDQCI NSKKVKLHVS PTFQLITKNP VPLHETEPAE DSTVREVLVS  300
EREECDLAEN QVGTVEEGMV VEDGCNEYIL LKRGEQSDGN DAFHKSQSEI HCNDAVMPKD  360
SGDDETQHNL SVDEAKGDGE HPADPRNAPP IDGSLNKSSS KESKFDSEHD SQLRALNPAS  420
QNGYRQNIIA GEAEENMDCC QEAGRSSNSD GYHSEGIDVI TKKHEFLSSQ CTIRHSSSTV  480
DEWTGLNLCM KCNEGGQLLA CKSSSCPLLL HENCLGSAAR FDDKGDFYCP FCAYSRAITE  540
YLESKKKTSL AKKELDAFIH AGSKKQTTEF IGKLSKKENS CTKVNGEVDF LNKAHENKHS  600
GQREENQENQ DERHASKVYD VQFQKFIVDK QQADPSASCN NVSLECEENR TSLTCGMPHG  660
PTGEEKGEEE VVKECTTARG HEEQPNQVVE NSGNVVCENS DMIVENQEPA NERIQQEVLK  720
EHITDTPEKP VPVCVIDNNE DEISEDDESV ISNYRIRVLR TGKQYTYPIA PQSRRKKAPW  780
TTTEEELLME GVKKFSSASK RAIPWTEILE FGSSVFLKGR TAMDLKDKWR NMSKGFRTPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899006.10.0uncharacterized protein LOC107432393
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.21e-06TRF-like 3