PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015898941.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 388aa    MW: 41547.5 Da    PI: 9.0053
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015898941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1375.5e-4383158176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC++dls+ak y+ rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_015898941.1  83 RCQVEGCKVDLSDAKAYYCRHKVCGMHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 158
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-3577145IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.35181158IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-4182162IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3284157IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGQMVTHMEM GCSSMTESGG SSSSSPPNSS TESLNGLKFG QKIYFEDVGP GTPSKSGAGS  60
SSSGPGPSKK VKAGIVQTGQ PPRCQVEGCK VDLSDAKAYY CRHKVCGMHS KTPKVIVAGL  120
EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG HNERRRKPPP GSLLSTRYGR LSTPIFENSN  180
RVGVGGGSFL MDFSAYPRLA GRDAWTLART SERVPGNQST NTAVKLLPNL WQSNSESPPS  240
DLFLQGSAGG SSFSGQGISP GECISGVTDS SCALSLLSNQ PWASRDRPSG LVVHSSVNAE  300
GVPVVQPTAP HGGTVNHFLT TSWGFKDNVT SSSSQEILPN LGLGQMLQPL TIQFSGEVEL  360
SQQNRRQFME LGHSRDYDSA GQNMPWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30841571184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015898941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898941.10.0squamosa promoter-binding-like protein 9 isoform X1
TrEMBLW9RJ151e-178W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.11e-179(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-67squamosa promoter binding protein-like 9