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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 119aa MW: 14112.9 Da PI: 8.8919 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 34 | 88 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_015898907.1 34 RKKLRLSKEQSAFLEESFKEHSTLNPKQKDALAKQLNLRPRQVEVWFQNRRARTK 88 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.7e-39 | 34 | 112 | 1 | 79 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een + XP_015898907.1 34 RKKLRLSKEQSAFLEESFKEHSTLNPKQKDALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENIK 112 69*************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.313 | 30 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-19 | 31 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.1E-16 | 32 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 34 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.04E-13 | 34 | 91 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 34 | 88 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.3E-4 | 90 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MDFGVRRSKR DMEAIETERT SSRVSDDEEN GSTRKKLRLS KEQSAFLEES FKEHSTLNPK 60 QKDALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCCETLTEEN IKFLVLENS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 38 | TRKKLRL |
2 | 82 | 90 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898907.1 | 5e-82 | homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 4e-56 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A2P6RDF0 | 2e-64 | A0A2P6RDF0_ROSCH; Putative transcription factor HD-ZIP family | ||||
STRING | XP_004303339.1 | 2e-65 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-58 | homeobox from Arabidopsis thaliana |