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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 22743.8 Da PI: 9.3166 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 33 | 86 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k XP_015898575.1 33 KKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 86 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.3 | 3.6e-37 | 32 | 123 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++L++ev +L++ l+ XP_015898575.1 32 EKKKRLTSDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQELDVMSKEKQKLQEEVMKLKALLR 123 69**************************************************************************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-19 | 21 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.4E-17 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.83E-14 | 33 | 89 | No hit | No description |
Pfam | PF00046 | 4.2E-17 | 33 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 38 | 87 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-5 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-5 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEVKHQLMVP ETPQGLVSTM EKNSNSYSCS QEKKKRLTSD QLESLERSFQ EEIKLDPDRK 60 MKLSRDLGLQ PRQIAVWFQN RRARWKAKQL ERLYDSLKQE LDVMSKEKQK LQEEVMKLKA 120 LLREQAARKQ ISVGYTELSG EETVESTSVA AIRSSNKSQG MNQQQHQIAA CNNSVFNVEE 180 YNTVVSPSYW GALPSYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898575.1 | 1e-144 | putative homeobox-leucine zipper protein ATHB-51 isoform X2 | ||||
Swissprot | Q9LZR0 | 1e-56 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A251NAH2 | 1e-101 | A0A251NAH2_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A2P6RBE0 | 1e-101 | A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_008241330.1 | 2e-99 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-59 | homeobox 51 |
Publications ? help Back to Top | |||
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