PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015898326.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 359aa MW: 42349.8 Da PI: 4.7016

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015898326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	4e-15	118	202	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ v +L+e+ ++ +l+r++l+ +W ev++k+ +e ++er+ +qC++ ++ l+++ykk+k+ +++ t + s+++yf++++ XP_015898326.1 118 WTDHAVFVLLEVWGDRFLQLGRKSLRSEDWHEVAEKVsEELKIERTVTQCRNMLDTLKRKYKKEKKKMEE-TGLNYSKWAYFKKMH 202 ***********************************8889***********************98.689999******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-20	116	203	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDDMEDDARY PPKTYTLNYC NPSNNRRKVH RRENPYSRLI TKRYEDDDEM DEFDEETEAE 60 EDQDHQNGYF NNIEKDDDDD FDRHPKKRKL KNLISRYEFA PRVKPSFGDR SLGDEKDWTD 120 HAVFVLLEVW GDRFLQLGRK SLRSEDWHEV AEKVSEELKI ERTVTQCRNM LDTLKRKYKK 180 EKKKMEETGL NYSKWAYFKK MHMLMASPPR QDCGLACGVD SGEYVFMNTR VYLDRSNGYD 240 EMRDSPGESE SSEGENENVN GNDLDGILSR RMRSGGNGFQ GSSVRVLADS IQKFGEVYEK 300 IESSKRQQMM ELEKMRLDFH KELEIQKKQI LERAQAEIAK IHEEDDEETD PSATEDLSE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDDMEDDARY PPKTYTLNYC NPSNNRRKVH RRENPYSRLI TKRYEDDDEM DEFDEETEAE  60
EDQDHQNGYF NNIEKDDDDD FDRHPKKRKL KNLISRYEFA PRVKPSFGDR SLGDEKDWTD  120
HAVFVLLEVW GDRFLQLGRK SLRSEDWHEV AEKVSEELKI ERTVTQCRNM LDTLKRKYKK  180
EKKKMEETGL NYSKWAYFKK MHMLMASPPR QDCGLACGVD SGEYVFMNTR VYLDRSNGYD  240
EMRDSPGESE SSEGENENVN GNDLDGILSR RMRSGGNGFQ GSSVRVLADS IQKFGEVYEK  300
IESSKRQQMM ELEKMRLDFH KELEIQKKQI LERAQAEIAK IHEEDDEETD PSATEDLSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015898326.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898326.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A251NFI8	1e-141	A0A251NFI8_PRUPE; Uncharacterized protein
STRING	XP_009352475.1	1e-146	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-86	Trihelix family protein