PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015898010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28597.4 Da PI: 7.4438 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8e-14 | 82 | 128 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+ve +++L XP_015898010.1 82 KNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKATLLGKVVERVREL 128 58*************************8.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-11 | 82 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.99E-12 | 82 | 131 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-15 | 83 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 83 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.2E-5 | 167 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MQAGGENPEQ LYRLLAQNGL IEMGAYGGGG TAGISCCINN SSSETLSGMQ SFCSSNSCYY 60 PLELDTTPPP PLPHDRALAA LKNHKEAEKR RRERINSHLD KLRTLLPCNS KTDKATLLGK 120 VVERVRELKE ETSEISREVE SLPSESDEIS VVDYSTSSDG RLIFKASLCC EDRSDLIPDL 180 IEILKSLHLK TLKSEMATLG GRFRNVLIVA ADKPDHHSIE SLHFLQNAFK SLLERSNSSS 240 ERSKRRRCLD RKLFSST |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015898010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898010.1 | 0.0 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 9e-77 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A251N653 | 1e-108 | A0A251N653_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240669.1 | 1e-109 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-53 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|