PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897552.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 516aa    MW: 56732.1 Da    PI: 4.5673
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.1e-36351262102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_015897552.1  35 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRN 120
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_015897552.1 121 INRRKP 126
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-6531124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3631124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-4032124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEGVSNGGDK SSGGGGGAQQ PAPTPITNTN APPPFLSKTY DMVDDPATDA IVSWSPTNNS  60
FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKHLLRN  120
INRRKPAHGH SNQQPQQSHG QSSVGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ  180
QSTDTQLQTM VQRLQGMEQR QQQMMSFLAK AVQSPGFLAQ FVQQKNESNR RISEANKKRR  240
LKQEGIAENE HSAAPDGQIV KYQPLMNDAP QAMLRQILKV DNSAQMDSFN KNPDGFLIGD  300
GSSSSIDSGS SSTRVSGVRL QEVPPTSGQS LPATSELTRH CPSAAISEIQ SSSLPATSER  360
VTTAPFPDIS VLVGAQERPS IPLSQGDVVM PELSQMQEMV PDGAVDIPED DYMGTETGDG  420
FIPMSAGMNG SMSIEIDNFT PIDDIPPDPE IDALFENPSF WDEILVQSPV PDESTPAEEI  480
PKGNEVQPTE NGWDKVQHVD KLTEQMGLLA SETKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-291612410129Heat shock factor protein 1
5d5v_B5e-291612410129Heat shock factor protein 1
5d5v_D5e-291612410129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242NKKRRLKQ
2236241KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897552.10.0heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A061G5S90.0A0A061G5S9_THECC; Heat shock transcription factor A1D isoform 1
STRINGEOY251600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-134heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]