PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015897499.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 403aa MW: 46156.1 Da PI: 5.1245

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015897499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.6	3.4e-12	56	101	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY +YAk++GFs+r s++k++k+++e+ +++fvC+keg +++++ k XP_015897499.1 56 FYIKYAKDAGFSIRSSSTKRRKDTNEVARKEFVCYKEGVSSTKDAK 101 9**************************************9999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-9	56	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-29	160	253	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MNDLQLEEND DPKGVKEISL LSCSNSIDDV YIPQVSEKCK SKVGQQFKSI DEAHVFYIKY 60 AKDAGFSIRS SSTKRRKDTN EVARKEFVCY KEGVSSTKDA KLCNELRGHD AELLKEYFLT 120 KQESDPCFFF KIDVDDDGKL KCCFWADLVS RRAYGCFGDV IVFDTTYNTN WYGMIVAPLI 180 RVNNHGQTVL FTCAFLSDER TESFAWLFEL LKDSMPTNNP KMIITDQDPA MTKAIAQSLP 240 NTFHSYCSWH ILEKFSTYLN AITYRDFYKD FQQYIWESEC PEEFERKWMT TIEKASLYDN 300 DWWTRVAKSQ IISDKQGVEI SGKRSSMLMW RAKLFQFALE VIDNAITNEE ASVIVNDGLQ 360 SLLDNIKSVV ITTKSGGISE KGSNPHDVEA SKDPSQVRAK GYG

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MNDLQLEEND DPKGVKEISL LSCSNSIDDV YIPQVSEKCK SKVGQQFKSI DEAHVFYIKY  60
AKDAGFSIRS SSTKRRKDTN EVARKEFVCY KEGVSSTKDA KLCNELRGHD AELLKEYFLT  120
KQESDPCFFF KIDVDDDGKL KCCFWADLVS RRAYGCFGDV IVFDTTYNTN WYGMIVAPLI  180
RVNNHGQTVL FTCAFLSDER TESFAWLFEL LKDSMPTNNP KMIITDQDPA MTKAIAQSLP  240
NTFHSYCSWH ILEKFSTYLN AITYRDFYKD FQQYIWESEC PEEFERKWMT TIEKASLYDN  300
DWWTRVAKSQ IISDKQGVEI SGKRSSMLMW RAKLFQFALE VIDNAITNEE ASVIVNDGLQ  360
SLLDNIKSVV ITTKSGGISE KGSNPHDVEA SKDPSQVRAK GYG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015897499.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875937.1	1e-165	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-81	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_008246383.1	3e-86	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-40	FAR1 family protein