PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897450.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 875aa    MW: 96464.5 Da    PI: 7.2461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-18324423198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_015897450.1 324 FEKMLSASDAGRIGRLVLPKACAEAYfpAISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 416
                     89**************************666667778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_015897450.1 417 LIMGFRK 423
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-29316427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-18321423IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-21322423No hitNo description
SMARTSM010191.8E-19324425IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138324425IPR003340B3 DNA binding domain
PfamPF023621.4E-15324423IPR003340B3 DNA binding domain
PROSITE profilePS5105014.737553603IPR011124Zinc finger, CW-type
PfamPF074961.0E-11558600IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MACMNVSCGA SNSIEWKKGW PLRSGGYANL CDKCGSAYEQ FIFCDIFHAK ESGWRECTLC  60
GKRLHCGCVA SRFLLELLDG GGVKCINCAK NSGLRSITND EKPNGPGTSK VSDLQLGSVN  120
NQLDGSFEQI KVMQLANDTQ GNGLRDLLQS QKDDSNGLFR KMKQEEVPQS VSEIRSTCLS  180
NLNQASNGSS EASKAELCKA NIGTNDIYES LPHTNLSMTL GTPLGNLNPF PGAIVDEREN  240
SKASPPFLQG ARSRHLLPKP PKSALATGLE ANTSMASQGQ IRVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QISGDSNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PAISQPEGLP  360
LKIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MDPEGKLIMG  420
FRKASNSVAM QSLKGSADTP LNPLSKHLTS ACADISWHKS EKHEGRTREG LLLPSLLVPE  480
KKRARNIGSK SKRLHIDSHD ALELKLTWEE AQDLLRPPPA VKPSTVVIED HEFEEYEEPP  540
VFGKRSIFTV RSSGEQEQWV QCDGCFKWRR LPVDVLLPSK WTCVDNAWDQ SRCSCSAPDE  600
LSSRELESLL RMNKEFKKRR TAATNQRLSQ EHESSGLDAL ANAAILGDNA ADPGTTSVAT  660
TTKHPRHRPG CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFNTLMMNKK KRQSEREAEI  720
AQRNQQAWAS RDEAEVESSS RHVSSQLDPS DNEAKSANEL ESKSQSKSAE TAKEKLDLNS  780
HPGREEDLQA GSSRVSMMSL LQVASRPLDT YLKQNGLTSL IQEQQTSSAT HALPQVTTES  840
EGQRNEDPCC ASGVQERESG DEEQCETDQN QSDPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693024312131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897450.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A2P5F4P10.0A0A2P5F4P1_TREOI; Zinc finger-type transcription factor
STRINGXP_008244859.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]