PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897449.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 911aa    MW: 100264 Da    PI: 6.9968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-18324423198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_015897449.1 324 FEKMLSASDAGRIGRLVLPKACAEAYfpAISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 416
                     89**************************666667778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_015897449.1 417 LIMGFRK 423
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-29316427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-18321423IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-21322423No hitNo description
SMARTSM010191.8E-19324425IPR003340B3 DNA binding domain
PfamPF023621.5E-15324423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138324425IPR003340B3 DNA binding domain
PROSITE profilePS5105014.737589639IPR011124Zinc finger, CW-type
PfamPF074961.1E-11594636IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MACMNVSCGA SNSIEWKKGW PLRSGGYANL CDKCGSAYEQ FIFCDIFHAK ESGWRECTLC  60
GKRLHCGCVA SRFLLELLDG GGVKCINCAK NSGLRSITND EKPNGPGTSK VSDLQLGSVN  120
NQLDGSFEQI KVMQLANDTQ GNGLRDLLQS QKDDSNGLFR KMKQEEVPQS VSEIRSTCLS  180
NLNQASNGSS EASKAELCKA NIGTNDIYES LPHTNLSMTL GTPLGNLNPF PGAIVDEREN  240
SKASPPFLQG ARSRHLLPKP PKSALATGLE ANTSMASQGQ IRVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QISGDSNSTI VPLFEKMLSA SDAGRIGRLV LPKACAEAYF PAISQPEGLP  360
LKIQDVKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR MDPEGKLIMG  420
FRKASNSVAM QDTHPSAIHN GGHSSETFFS GVFENLPIIS GYSGLLQSLK GSADTPLNPL  480
SKHLTSACAD ISWHKSEKHE GRTREGLLLP SLLVPEKKRA RNIGSKSKRL HIDSHDALEL  540
KLTWEEAQDL LRPPPAVKPS TVVIEDHEFE EYEEPPVFGK RSIFTVRSSG EQEQWVQCDG  600
CFKWRRLPVD VLLPSKWTCV DNAWDQSRCS CSAPDELSSR ELESLLRMNK EFKKRRTAAT  660
NQRLSQEHES SGLDALANAA ILGDNAADPG TTSVATTTKH PRHRPGCSCI VCIQPPSGKG  720
KHKPTCTCNV CMTVKRRFNT LMMNKKKRQS EREAEIAQRN QQAWASRDEA EVESSSRHVS  780
SQLDPSDNEA KSANELESKS QSKSAETAKE KLDLNSHPGR EEDLQAGSSR VSMMSLLQVA  840
SRPLDTYLKQ NGLTSLIQEQ QTSSATHALP QVTTESEGQR NEDPCCASGV QERESGDEEQ  900
CETDQNQSDP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-693024312131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897448.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_015897449.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2P5F4P10.0A0A2P5F4P1_TREOI; Zinc finger-type transcription factor
STRINGXP_008244859.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]