PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARR-B | ||||||||
Protein Properties | Length: 563aa MW: 62764.7 Da PI: 6.0392 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.8 | 4.9e-28 | 319 | 372 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_015896805.1 319 IKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 372 5899****************.********************************96 PP | |||||||
2 | Response_reg | 27.6 | 1.5e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + + +r+ le +y +v ++ + +eal + k +++ + ++ +++d e +k +++++ +lp i+ + +++ +++ +G XP_015896805.1 20 VLVVDGDSNSAAEMRSKLEAMDY-VVFTFCNVTEALSAFSSKPesFHVAIAEVNTSDVD--ESFKFLENAK-DLPTIMTSNIHCLNTMMKCIALG 110 89*********************.***************766666*******9998866..7778887777.99***9999889*********** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp + e+l++ XP_015896805.1 111 AVEFLRKPLSDEKLRN 126 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.42E-16 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.7E-16 | 16 | 139 | No hit | No description |
SMART | SM00448 | 0.008 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 20.737 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.6E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.25E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 16.251 | 315 | 374 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-27 | 316 | 374 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.06E-18 | 317 | 375 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-25 | 318 | 373 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 321 | 370 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MVCTANDLQG WKDFPKGLRV LVVDGDSNSA AEMRSKLEAM DYVVFTFCNV TEALSAFSSK 60 PESFHVAIAE VNTSDVDESF KFLENAKDLP TIMTSNIHCL NTMMKCIALG AVEFLRKPLS 120 DEKLRNIWQH VVHKAFNAGG GLLSKPDKHV KESIVSTLQL KLEKDGEPND KISMENENVD 180 EIQENDPEQS PGSDKYPAPS TPQLKQGTRL LDDGDCQDQT NCSTEKENGE QDSESKSVET 240 TCCNTIVEGA LSTGQPQMQE NTTVKEEEDS ADGSKNENDM LSHPHNDGSF NNISSGAEIP 300 RKASGLNNLC GSKSNRKKIK VDWTPELHKK FVQAVEQLGV DQAIPSRILE LMKVEGLTRH 360 NVASHLQKYR MHKRHILPKE EDRRWPHHRD PMQRNYYPHK PIMAFPPYHS SHALAMPPIY 420 PMWGQPGGHP ASVQMWQTPP PNYNPWQPTE SWHWKPYTGM HADAWGCPVM PPHGPYPSYP 480 QTAAAGYPNA GVVDNIGLSM PQNSFELHPA EEVIDKVVKE AISKPWLPLP LGLKPPSTDG 540 VLAELSKQGI CRIPPQINGY NSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-17 | 323 | 372 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896805.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896804.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Refseq | XP_015896805.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Refseq | XP_015896806.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Refseq | XP_024935014.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Swissprot | Q6LA43 | 1e-149 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A2P5BSP5 | 0.0 | A0A2P5BSP5_TREOI; Two-component response regulator | ||||
STRING | XP_010104373.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-153 | ARR-B family protein |
Publications ? help Back to Top | |||
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