PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896639.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 676aa MW: 75829.6 Da PI: 8.7908

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.2e-12	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar Rt+ q+ s+ qky XP_015896639.1 99 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 143 8***************************89**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.612	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-16	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-19	95	147	IPR006447	Myb domain, plants
SMART	SM00717	8.0E-11	96	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-11	96	142	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-10	99	143	IPR001005	SANT/Myb domain
CDD	cd00167	9.40E-9	99	144	No hit	No description
Pfam	PF10250	2.5E-7	247	565	IPR019378	GDP-fucose protein O-fucosyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSHYAGS SSGANPGGAN 60 IPGSPGETPD HGGAADGYAS EDFVPGSSSS CRERKKGVPW TEEEHRMFLL GLQKLGKGDW 120 RGIARNYVIS RTPTQVASHA QKYFIRQTNV SRRKRRSSLF DIVADESADT TMEPQDFLSV 180 TARPWPNKKP SHRSPFLFLS FLFFFFLFFF LLYYSFTPPS LFLDSLKTPF PSPPECASRV 240 PFPGEKFLWY APHSGFSNQL SEFKNAILMA GILNRTLIVP PILDHHAVAL GSCPKFRVLD 300 PDKIRISVWE HVVELIRSGR YLSMADIIDV SSLISSSFVR AIDFRVFAFH WCNLNIDATC 360 VNKLDMPSTF LHSLKQCGSL LSGLDGSVEK CLYAVNKDCR TTVWTYKNGN EDEALDSFQP 420 DDQLKKKKKT SYVRKRCDVY KNLGPGSEAE SATLLAFGSL FTAPYKGSEL YIDIHETPRD 480 QRIQNLMQKI EFLPFVPEII NAGKKFAHET IRAPFLCAQL RLLDGQFKNH RKSTFLGLKQ 540 KLESFHQSPH PIHIYIMTDL PESNWTGSYL EDLAGDSNRF KLFSLKEKDE LVRETAKRLV 600 DASHGLSFGF IPKTRDGGGK INKYCHPPML PDVLLYIEET VCSCASLGFV GTPGSTIAES 660 IELMRKHEVC SSQTEP

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSHYAGS SSGANPGGAN  60
IPGSPGETPD HGGAADGYAS EDFVPGSSSS CRERKKGVPW TEEEHRMFLL GLQKLGKGDW  120
RGIARNYVIS RTPTQVASHA QKYFIRQTNV SRRKRRSSLF DIVADESADT TMEPQDFLSV  180
TARPWPNKKP SHRSPFLFLS FLFFFFLFFF LLYYSFTPPS LFLDSLKTPF PSPPECASRV  240
PFPGEKFLWY APHSGFSNQL SEFKNAILMA GILNRTLIVP PILDHHAVAL GSCPKFRVLD  300
PDKIRISVWE HVVELIRSGR YLSMADIIDV SSLISSSFVR AIDFRVFAFH WCNLNIDATC  360
VNKLDMPSTF LHSLKQCGSL LSGLDGSVEK CLYAVNKDCR TTVWTYKNGN EDEALDSFQP  420
DDQLKKKKKT SYVRKRCDVY KNLGPGSEAE SATLLAFGSL FTAPYKGSEL YIDIHETPRD  480
QRIQNLMQKI EFLPFVPEII NAGKKFAHET IRAPFLCAQL RLLDGQFKNH RKSTFLGLKQ  540
KLESFHQSPH PIHIYIMTDL PESNWTGSYL EDLAGDSNRF KLFSLKEKDE LVRETAKRLV  600
DASHGLSFGF IPKTRDGGGK INKYCHPPML PDVLLYIEET VCSCASLGFV GTPGSTIAES  660
IELMRKHEVC SSQTEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896639.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208676	6e-80	KF208676.1 Arachis hypogaea putative MYB-related protein 22 (MYB22) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896639.1	0.0	O-fucosyltransferase 30
Swissprot	Q1JPM5	0.0	OFT30_ARATH; O-fucosyltransferase 30
TrEMBL	W9RPP9	0.0	W9RPP9_9ROSA; Uncharacterized protein
STRING	XP_010104870.1	0.0	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	6e-91	MYB_related family protein

Publications ? help Back to Top
Hansen SF,Harholt J,Oikawa A,Scheller HV Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families. Front Plant Sci, 2012. 3: p. 59 [PMID:22629278] Wang Y,Mortimer JC,Davis J,Dupree P,Keegstra K Identification of an additional protein involved in mannan biosynthesis. Plant J., 2013. 73(1): p. 105-17 [PMID:22966747]