PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 24030.2 Da PI: 8.3769 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 118 | 176 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrC +++C+vkk+++r ++d ++v++tYeg Hnh+ XP_015896460.1 118 LDDGYRWRKYGQKSVKKNNNPRSYYRCCHHTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 176 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-31 | 105 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 111 | 177 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.047 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-34 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-24 | 119 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDEEIQPDLL PSSFIPDITL PLVPSTSMNL LSDPLHQLTQ ESDQIANSDI DWISLLCGST 60 KYDDQNPAPS SPIVSIKAKS ENKGENHGNK NKEKVTRSTK KAIPPRIAFH TRSADDILDD 120 GYRWRKYGQK SVKKNNNPRS YYRCCHHTCN VKKQIQRLSK DSSIVVTTYE GIHNHPCEKL 180 MESLTPLLKQ LQFLSRFQHL EPVHSCHGQQ L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-23 | 106 | 175 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896460.1 | 1e-157 | probable WRKY transcription factor 24 | ||||
Swissprot | Q9FFS3 | 2e-56 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A059CHT4 | 7e-69 | A0A059CHT4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053205.1 | 1e-69 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 4e-57 | WRKY DNA-binding protein 24 |