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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24399.8 Da PI: 4.1308 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 25.6 | 2.4e-08 | 24 | 52 | 31 | 59 |
T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 31 gCpvkkkversaedpkvveitYegeHnhe 59 C +k+vers+++p++++itY+ eH h XP_015896457.1 24 ICGKRKQVERSSSNPEIFIITYTAEHIHA 52 599***********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 1.1E-4 | 25 | 51 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.405 | 25 | 54 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-5 | 25 | 54 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-6 | 25 | 54 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKICKLGSAL SLCLSFNGEL GLAICGKRKQ VERSSSNPEI FIITYTAEHI HAHPVRRNSL 60 SGSSRSKFPA SSKHKSDKKN SCLVESIEDD ELVQTVRVKK EEEQEQVVDV EIERNEIEMM 120 DMMLSHEGTI PSSSSEDFVD NKQTSLEPDM DSRFLDDQFF SDGFVDAWFL DQPAKLSSLD 180 DSLNSNNEDY STWGLSNLDR FLNEAEEEEE DDDEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896457.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896457.1 | 1e-156 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A251PA29 | 4e-28 | A0A251PA29_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239089.1 | 1e-29 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 7e-13 | WRKY DNA-binding protein 27 |