PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896265.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 370aa    MW: 41825.5 Da    PI: 5.0396
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29141201259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H+++
  XP_015896265.1 141 DDGYSWRKYGQKDILGAKYPRSYYRCTFRntqSCWATKQVQRSDDDPSVFEITYRGKHTCS 201
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.561135198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-29136202IPR003657WRKY domain
SuperFamilySSF1182904.71E-26139202IPR003657WRKY domain
SMARTSM007742.2E-41140202IPR003657WRKY domain
PfamPF031065.4E-27141200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MESNSCRWEQ KTLMNELMQG MELAKQLRLN LGAKSSAETR EFLLQKILSS YEKSLMILKW  60
SGPMVQPQTQ TQTQIQGVTV TVSVPPESPI SVDESPRGDE FDRGTIIKED LRDCSKKRKV  120
LPRWTDHVRI NSENGLEGPH DDGYSWRKYG QKDILGAKYP RSYYRCTFRN TQSCWATKQV  180
QRSDDDPSVF EITYRGKHTC SQGSNPVQPP ASPEKQESKL HNQNLVPQQQ QQYGEQFSLQ  240
SPSNSRVNNE DLERREVVAP PFSFPSGSCG YMMGEDNFSA LVLDNETFLG SFSQSFLSPA  300
TPEPNYYMAS PSRMNNLAGI HNGQRSESDL PEIISANTSA SNSPIPDMDF SLERVEIDTN  360
FPFDTAGFFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19141200968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118LRDCSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896265.10.0probable WRKY transcription factor 41
TrEMBLA0A2P5EAA81e-177A0A2P5EAA8_TREOI; WRKY domain containing protein
STRINGXP_010104968.11e-165(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-63WRKY family protein