PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896010.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 297aa    MW: 33864.7 Da    PI: 5.8617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_015896010.1 14 RGPWTPREDTLLMKYIQEHGEGRWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding513.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++Ed+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_015896010.1  67 RGNISADEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.323961IPR017930Myb domain
SuperFamilySSF466891.36E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-131363IPR001005SANT/Myb domain
PfamPF002498.9E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241568IPR009057Homeodomain-like
CDDcd001671.27E-101661No hitNo description
PROSITE profilePS5129425.55762116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2569117IPR009057Homeodomain-like
CDDcd001679.97E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGPWTPR EDTLLMKYIQ EHGEGRWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI SADEDDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLKNNK  120
EQTSKNPTTT QKGAPKCEQK KKSNKNDSSI AHCEEEEEEE EEEEEEEEII TKTKVHLPKP  180
VKVSSFPNLT RSNNSFDYGM VISSGTSSSS QGEGVSDAEV LNVHPFWPEL VNDAIIHFDY  240
EGNSTTDTSS QNNVAAENQA QAQDYNMLDK IYEEYQQLLK AEDHHDQLDS FVQSLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896010.10.0myb-related protein 308-like
TrEMBLA0A061DUF41e-101A0A061DUF4_THECC; Myb domain protein 7, putative
STRINGEOX956611e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-65myb domain protein 111