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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 511aa MW: 57864.2 Da PI: 7.0464 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 154.4 | 6.9e-48 | 125 | 269 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnss 86 +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++ + +s+s +++ s+ XP_015895746.1 125 TGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFLKSKSAIKELKENvvpptpqgkqNCQSSSTTSEISE-------- 211 79**************************************************************66554433221111111133333........ PP TCP 87 sg.........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135 +aa + + ++k+++k+++ ++ kesr+kar+rarertrekm+i+++ XP_015895746.1 212 -VlsartieiiDAADDREeNGKEKKKRKKLCYKVGKESREKARERARERTREKMKIRSE 269 .144455557755555555888888888888*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-44 | 125 | 265 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.245 | 127 | 185 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.072 | 246 | 263 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MFPNSSNVYN PFPNIINSNH HSNITPESNF SMTCTSDHGN AINFHTLIDH HQHEYDDYDD 60 GLLLSHLLSQ QQLLLSPQPD HQIEEDHSFN ISKDQLEADA NTKGFSMMMK KKTSKSEGQS 120 RRKRTGKKDR HSKICTAQGP RDRRMRLSLQ IARKFFDLQD MLGFDKASKT IEWLFLKSKS 180 AIKELKENVV PPTPQGKQNC QSSSTTSEIS EVLSARTIEI IDAADDREEN GKEKKKRKKL 240 CYKVGKESRE KARERARERT REKMKIRSEN GGIERSKEMN HRHYDNSLKM VCEAHHDQDQ 300 PVNIDELAAV GDDDKVHVMN YPNCCVQGDL MRGSSRSRSS SSVICDYLQE IGVTSSGGAN 360 SEEDFLGNFP GNWDTSNAKT QSFSCTITNA KRFTAAAAAA GGNQLCCPIY STNFSDIQEE 420 KPSNNYSIVF PNPCSIFVNQ SDHHIQTQEQ NPNFDNTSPI FLTGLIAQDQ QQNHPSSNLL 480 TNSNILWQSQ ILENQYFSCN PIISNKNHIS Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 123 | KKKTSKSEGQSRRKR |
2 | 232 | 239 | EKKKRKKL |
3 | 234 | 238 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895746.1 | 0.0 | uncharacterized protein LOC107429548 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-34 | TCP domain protein 12 |