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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 26803.1 Da PI: 8.2204 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P++G+vg+++++++ +q+ XP_015895621.1 4 SCNGCRVLRKGCSNGCSIRPCLqwiksPDSQAHATLFLAKFYGRAGLLNLINAGPQHLRPAIFKSLLYEACGRIVNPINGSVGLLWSGNWTKCQA 98 6********************************************************************************************** PP DUF260 91 kaelallkee 100 +++++l++++ XP_015895621.1 99 AVDAVLAGSP 108 **99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.256 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-23 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSNGCS IRPCLQWIKS PDSQAHATLF LAKFYGRAGL LNLINAGPQH 60 LRPAIFKSLL YEACGRIVNP INGSVGLLWS GNWTKCQAAV DAVLAGSPID GTDATASNRS 120 LSLNACDIRH VAREPSWAAS DHNLNQVNNR SRFKRTVSRP KTQFGLAAGS NSVDSDGFLT 180 PGLTRIGVDE FSGLTGHDSL ANGNSGEEES MFSVETVEAS SLRRAAQQDS APNLGSQAGD 240 GEVRLELTLG LA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895621.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895621.1 | 0.0 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 7e-73 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A2N9G5G8 | 4e-93 | A0A2N9G5G8_FAGSY; Uncharacterized protein | ||||
STRING | XP_010103761.1 | 3e-93 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 3e-75 | LOB domain-containing protein 42 |