PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 25223.7 Da PI: 9.3947 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 78 | 132 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++++++ +++e LA +l+L+ rqV vWFqNrRa+ k XP_015895488.1 78 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSK 132 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.7e-38 | 78 | 166 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ XP_015895488.1 78 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALALQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLQREVEELRA 166 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.96E-19 | 67 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-17 | 76 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.79E-17 | 77 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 78 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-16 | 78 | 132 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.2E-21 | 134 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.2E-9 | 134 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAVSRTSSSS LELTISVPGF SPSPSLPSSG RNLDINQVPT TGGEADHEEW MRAGSMELED 60 EEICIINGSS AASGGPPRKK LRLTKEQSRL LEESFRQHHT LNPKQKEALA LQLKLKPRQV 120 EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL SEQNRRLQRE VEELRAMKVG PPTVISPHSC 180 EPLPASTLTM CPRCERVTTT ATTTTIDKGP TKNTAATLSS KVPTPAL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 134 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895488.1 | 1e-166 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 2e-80 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 2e-80 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A1Q3BH86 | 1e-112 | A0A1Q3BH86_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein | ||||
STRING | cassava4.1_022041m | 1e-111 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9506 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-60 | homeobox-leucine zipper protein 17 |