PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895330.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 506aa    MW: 56040 Da    PI: 5.4085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10305345954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r+RR ++N+++  Lr l+P++     +K++ a+++  A+eYI++L
  XP_015895330.1 305 DRQRRVQLNDKYRALRNLVPNP-----TKNDRASVVGDAIEYIREL 345
                     79********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.287296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-7302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12304364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8305345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-10305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-9306349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MYGDQNGCSF DWEENAAKSE DGFSQTLHNM NPQLPSQPSS SFKPQEGWTS TNATINGQPS  60
FVVEDITLSM EEISNHQAHH HLRHHHHPPQ EGDLLSAATA MDMELQHQLA LEAVENSYNS  120
NGGNSNNNTH LVSSFEQQSN WVDPQLPESP YPPAPDLLNL FNLPRCSNSS LLPNSSSNLT  180
FTNTTLKPIQ NSLSFLGDNH HHLPTAAVMD SASASSVLYD PLFHLNLPPQ PPLFRELFQS  240
LPNGYSLPGS RNGSLFSNGG DEMEGSGGVY QEGSDGRQFE NGVFQFTAAI GEGRDGKGTK  300
QFPTDRQRRV QLNDKYRALR NLVPNPTKND RASVVGDAIE YIRELLRTVN DLKLLVERKR  360
CGREGIKRQK LEAENAAGAN GDVDSSNIKP LIVDPADQAY NTSLRSTWLQ RKSKDTEVDI  420
RIVDDEVTIK LAQRKKINLL LFASKVLDEL QLDLHHVAGG HVGDYYSFLF NSKIYEGSSL  480
YASAIANKLI EVLDNQYAGV PPTNSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895330.10.0transcription factor bHLH91-like
TrEMBLA0A251QGX60.0A0A251QGX6_PRUPE; Uncharacterized protein
STRINGXP_009361467.11e-162(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-88bHLH family protein