PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_015895107.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 512aa MW: 55311.9 Da PI: 6.6204

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	153	213	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss XP_015895107.1 153 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 213 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	150	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-32	155	211	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	157	211	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	159	195	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MSESRDPAIK LFGKTIALPL NQQQEVSPDD DTSGIACAIY SDSGFVAVET CSDDDHKLLS 60 SPTTTSREDY TANEGDGQDG DGNKETSVKE LNSDRDDTSD QIAEDSKDPT TSSGISDNPK 120 TPSVERETSS LKTSKNEEQS NTSSPQEKTL KKPDKILPCP RCNSMETKFC YYNNYNVNQP 180 RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK NSSSSHYHHI VMSDALQTAR ANTANGVQHS 240 SLGSNGTVLT FGSDSPLCES MASVLNLAVK TQKYARNGLH RHEQRVMVSS GGGESADDHS 300 SGSSITASNS LERGSKPAIK EHQALPPQVP CFPGPPWPYP WNSTQWTSPV PPPAFCHSGF 360 PVSFYPAPPY WGCTVPGSWN MPCLSSPSST LGYPLPSSGP NSSTLGKHSR DGNILNPASS 420 QKEEPVKENN NSEISVLIPK TLRIDDPSEA AKSSIWATLG IKNEKLNSVN GGGLFKVFQS 480 KGDDKNHVVE TSPVLQANPA ALSRSVSFHE RT

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MSESRDPAIK LFGKTIALPL NQQQEVSPDD DTSGIACAIY SDSGFVAVET CSDDDHKLLS  60
SPTTTSREDY TANEGDGQDG DGNKETSVKE LNSDRDDTSD QIAEDSKDPT TSSGISDNPK  120
TPSVERETSS LKTSKNEEQS NTSSPQEKTL KKPDKILPCP RCNSMETKFC YYNNYNVNQP  180
RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK NSSSSHYHHI VMSDALQTAR ANTANGVQHS  240
SLGSNGTVLT FGSDSPLCES MASVLNLAVK TQKYARNGLH RHEQRVMVSS GGGESADDHS  300
SGSSITASNS LERGSKPAIK EHQALPPQVP CFPGPPWPYP WNSTQWTSPV PPPAFCHSGF  360
PVSFYPAPPY WGCTVPGSWN MPCLSSPSST LGYPLPSSGP NSSTLGKHSR DGNILNPASS  420
QKEEPVKENN NSEISVLIPK TLRIDDPSEA AKSSIWATLG IKNEKLNSVN GGGLFKVFQS  480
KGDDKNHVVE TSPVLQANPA ALSRSVSFHE RT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895107.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895107.1	0.0	cyclic dof factor 1 isoform X2
TrEMBL	A0A2P5G0I1	0.0	A0A2P5G0I1_TREOI; Zinc finger, Dof-type
STRING	XP_010108679.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-94	cycling DOF factor 2