PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895032.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 455aa    MW: 49832.2 Da    PI: 6.6494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16146191147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_015895032.1 146 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 191
                      899*****************************.***********996 PP
2Myb_DNA-binding56.85e-18198241146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_015895032.1 198 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 241
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17141192IPR017930Myb domain
SMARTSM007172.9E-14145194IPR001005SANT/Myb domain
PfamPF002499.6E-16146191IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-28146239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-26147199IPR009057Homeodomain-like
CDDcd001673.63E-13149190No hitNo description
PROSITE profilePS5129427.372193247IPR017930Myb domain
SMARTSM007178.9E-15197245IPR001005SANT/Myb domain
PfamPF002491.2E-14198240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-21200246IPR009057Homeodomain-like
CDDcd001675.28E-12200240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MANNYVIFAT ENQNGFRCCY SSTTSSSSSS SHCSSMGMVY ADMGSLSLSP NYGGVVSSIS  60
SHESYNISKL SEVEKNGRSF WGLPFPSSKH HKNEVLEGKG SDDCSDDIGE NNDAINNKPE  120
DDVNPNENAM VCGKETDCGH SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS  180
GKSCRLRWFN QLDPRINRRA FTEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH  240
VIMARKYREQ SSAYRRRKLS QSVYRRMDEA NPRAESSSGA AGTYCANLPS GSGLSNVNSY  300
PFGTTFSGGG GGVGGGVGYG MNCSPHMISG GEPMSSNHVN VPSNSGIFAQ QTPFDFFPGS  360
KSDEMMGMLR ESRAWDRSNE ESEMDVIHAH YPPCVPAMQQ SNYHILHSLS ESTASMPVVS  420
AGDHQPSSSI AVNGVGNHFE TIPPPFIDFL GVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341462467107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895032.10.0transcription factor CSA-like
SwissprotQ9SEZ45e-78MY105_ARATH; Transcription factor MYB105
TrEMBLF6HPQ31e-169F6HPQ3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02600.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-79myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]