PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894591.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92098.5 Da    PI: 6.4665
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_015894591.1 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                    5679*****************************************************97 PP
2START180.87.5e-571603682205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l 
  XP_015894591.1 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELL 253
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l +g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_015894591.1 254 YMQLYAPTTLAPaRDFWLLRYTSVLDDGSLVICERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 348
                     *******************************************9998899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_015894591.1 349 ESSTVLAQKTTMAALRQLRQ 368
                     ****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18674IPR009057Homeodomain-like
PROSITE profilePS5007115.7261175IPR001356Homeobox domain
SuperFamilySSF466892.1E-171279IPR009057Homeodomain-like
SMARTSM003891.2E-151379IPR001356Homeobox domain
CDDcd000869.29E-171676No hitNo description
PfamPF000462.9E-161774IPR001356Homeobox domain
CDDcd146861.14E-668107No hitNo description
PROSITE profilePS5084825.608150365IPR002913START domain
CDDcd088751.54E-79154370No hitNo description
SMARTSM002342.2E-43159369IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-23159366IPR023393START-like domain
SuperFamilySSF559613.98E-38159370No hitNo description
PfamPF018522.9E-54160368IPR002913START domain
PfamPF086705.9E-53694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMSCKDGKG GPDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRQHT  120
QTTTLATKDT SCESAVTSGQ HHVTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVLDD GSLVICERSL KNTQNGPTMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STVLAQKTTM  360
AALRQLRQIA HEVSQSNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSMMGNDGMD  420
DVTILVNSSP DKLMGLNLSF ANGFPAVSNA VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AIKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGVGHSPEDA  540
IMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDSGKEASSP  600
NRTLDLASAL EIGPSGNKAS SDYSANNGCM RSVMTIAFEF AFESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSQ AGLRSPLGTP EAQTLARWIC NSYRCYMGVE LLKSNTEGSE  720
SILKTLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKTLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFM FMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894591.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894591.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2P5ESQ50.0A0A2P5ESQ5_TREOI; Octamer-binding transcription factor
STRINGXP_010098130.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]