PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894316.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 479aa    MW: 52124.5 Da    PI: 7.567
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.14.4e-42183260178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+ak+yhr+h++Ce hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  XP_015894316.1 183 RCQVEGCNLDLSSAKDYHRKHRICESHSKSPKVIVGGLERRFCQQCSRFHPLSEFDEKKRSCRRRLSDHNARRRKPQP 260
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-34178245IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.129181258IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-40182263IPR004333Transcription factor, SBP-box
PfamPF031104.8E-33184257IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEWNTKPSLL WELENLLEFD VKATENPKKL QLTDCCVEGD RGISSGSFNS PGDGGGSGGT  60
GGYGSDLGHT SSKSSKSASI SSPSFGESKT SKFSIEAFEG HPKDFSGNKE SAEVEPSGSS  120
PTPEISAGSV EPLLSLKLGK RMYFEDASAG NNTKTSSLAV DPTSSPMTTK RCKSSCQNAL  180
VPRCQVEGCN LDLSSAKDYH RKHRICESHS KSPKVIVGGL ERRFCQQCSR FHPLSEFDEK  240
KRSCRRRLSD HNARRRKPQP EAVRLNPTRL SSLYDGQQQM NIVFDQSSRL YTRNAVNLTW  300
DGTDSSKLGE TKEFLSKPAK AGGATGQLHL LNNDMPSAVT TLYHDSGGLS PSKGTASEVL  360
NQGLEESVIS SNLDTTQDLH RALSLLSTSS WGSCGTKSVS QGNPNHINHT TMPQPSNTMH  420
AISQGLPFGS EYWQSEQLSL DNPSHISHPR SNSSSSNHFQ DLNLFRGPYE SGFYPNQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-281842571184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239256KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894315.10.0squamosa promoter-binding-like protein 3
RefseqXP_015894316.10.0squamosa promoter-binding-like protein 3
RefseqXP_015894317.10.0squamosa promoter-binding-like protein 3
RefseqXP_015894319.10.0squamosa promoter-binding-like protein 3
TrEMBLA0A2P5C1U90.0A0A2P5C1U9_TREOI; SBP-box transcription factor
STRINGXP_010102696.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.39e-72squamosa promoter binding protein-like 2