PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894025.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 513aa    MW: 57065.8 Da    PI: 6.262
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.91.9e-32278332155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +pr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v gLt++hvkSHLQkYRl
  XP_015894025.1 278 RPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVGGLTIYHVKSHLQKYRL 332
                     59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.181275335IPR017930Myb domain
SuperFamilySSF466893.58E-18276332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-31277333IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-24279333IPR006447Myb domain, plants
PfamPF002491.5E-9280331IPR001005SANT/Myb domain
PfamPF143797.0E-23392439IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKVGLPSTTM NRHNVISITQ TEAVKGGTQP YCSALSPVHD LLNVQSESQR LFSSECSSAH  60
PSPFIRAESL SSPTHMQESS IQPQKYSFRS DSNSSVSPGS NVQHPKSEFS RSSVFCTSLY  120
QSSSTSSETS RQLGNLPFLP HPSTCNQPIS AAVSTKSTLL YSGDLSDQYD EEQSEALMKD  180
FLNLSADSSN GSFHHGFGCA SDSLALTEQL ELHFLSDELD IAITDHGENP GLDEIYETPQ  240
PSSKPALGLT CNQSSRATTP SVDELSNHLS SGTATAHRPR MRWTPELHER FVEAVNKLDG  300
AEKATPKGVL KLMNVGGLTI YHVKSHLQKY RLAKYMPEKK EGEEQMIERF YACLKKSETK  360
FILLLASPKC IDICIKYQCR FYEIHLSCHR SVQITEALRM QMEVQKQLHE QLEVQRALQL  420
RIEEHARYLQ KILEEQQKAG SALESTQALS SLSDSEHQPS PLAESAKSDS SSPKRLKQKA  480
TESNELECTK RLRLEDKPES ARDDIAAVEN PEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-25278335259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7143781e-138JN714378.1 Ziziphus mauritiana microsatellite Zam192 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024934181.10.0myb family transcription factor PHL6
TrEMBLA0A2P5FLT00.0A0A2P5FLT0_TREOI; Octamer-binding transcription factor
STRINGEMJ165230.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-115G2-like family protein