PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 30033.6 Da PI: 6.426 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78 | 1.8e-24 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l+v +++ +kw+ tk+ +eHnH+l+ XP_015893698.1 78 EFYVVYGRRTGFNVRIHHNRRSRINNIVIGQDFVCSKEGYREKKYVYRKDR-VlpPPPITREGCPAMLRVALRDGEKWVATKFIKEHNHTLM 168 6******************************************99883333.234899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-22 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MESTSNQSFD SDDSDRCLQL ESYDEHVLVD DDVSKSINLC TEGDNKIKEQ SNDSLLIEGD 60 TIEPYIGMEF KSRDDAREFY VVYGRRTGFN VRIHHNRRSR INNIVIGQDF VCSKEGYREK 120 KYVYRKDRVL PPPPITREGC PAMLRVALRD GEKWVATKFI KEHNHTLMSP SKVPWRGCGK 180 NLISEDEKDR RIRELTLELS NERQRCRRRC AAYQERLHAV LKDIEQHTDH LSRRVQDIVQ 240 HIKEMENDQI EDSDY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893698.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893698.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_015893699.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P5DPC2 | 1e-150 | A0A2P5DPC2_PARAD; FHY3/FAR1 family | ||||
STRING | XP_002527269.1 | 1e-140 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-28 | FAR1 family protein |