PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893690.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 382aa    MW: 43355.3 Da    PI: 4.5254
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-073323642254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_015893690.1 332 WPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 364
                     59*****************************87 PP
2ELK30.67.5e-11285306122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+ +++++++E++
  XP_015893690.1 285 ELKHELKQGYKDKIVDVREEIL 306
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-18117161IPR005540KNOX1
PfamPF037901.9E-17119160IPR005540KNOX1
SMARTSM012564.8E-22173228IPR005541KNOX2
PfamPF037912.9E-15177227IPR005541KNOX2
SMARTSM011888.1E-4285306IPR005539ELK domain
PfamPF037898.3E-6285306IPR005539ELK domain
PROSITE profilePS512139.83285305IPR005539ELK domain
PROSITE profilePS5007111.629305368IPR001356Homeobox domain
SuperFamilySSF466895.99E-16307372IPR009057Homeodomain-like
SMARTSM003891.1E-10307372IPR001356Homeobox domain
CDDcd000862.17E-10308369No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25312370IPR009057Homeodomain-like
PfamPF059208.5E-18325364IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEFQEEVPHE MAFQTFMDQP EISIGGGGSS GGSGAPTWLN NAMFRQQQKF LNLQQAAESE  60
SRNDGIATAP ANKSLNCGDQ RTCRGEEEEE VEDDDEEEER EEEEEEEEMV VVECENARFK  120
ADIIRHPLYE QLLSAHVSCL RIATPVDQLP KIDAQLAQSH RVVAKYSAIG MKSGLQVVDE  180
KDLDQFMTNY VLLLCSLKEQ LQQHVRIHAM EAVVTCWELE QSLQSLTGVS PGEGTGATMS  240
DDDDDQVDSD VNLYDGSLDG PDSMGFGPLI PTETERSLME RVRQELKHEL KQGYKDKIVD  300
VREEILRKRR AGKLPGDTTS LLKAWWQSHS KWPYPTEEDK AKLVQETGLQ LKQINNWFIN  360
QRKRNWHTNL SSSPTSKSKR KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361381RKRNWHTNLSSSPTSKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893690.10.0homeobox protein knotted-1-like 4
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5BR520.0A0A2P5BR52_TREOI; Knotted-like homeobox transcription factor
STRINGGSMUA_Achr7P05170_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-151KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]