PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893354.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 666aa    MW: 77823.7 Da    PI: 7.8478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.17e-1451134189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Y+ ++k+ GF+v+k++s+ s  +g+ +   + Cs+ gk++++k++       ++ ++++Cka+++ +  +dgk ++++++leHnH l
  XP_015893354.1  51 EYYKLFGKQEGFRVKKKTSRLS-IDGKLKFVSLSCSRAGKSQSNKQN----FLISNASKMECKARVNATIFEDGKCKINSVVLEHNHGL 134
                     69****************9998.9999***************99888....77788899****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1051134IPR004330FAR1 DNA binding domain
PfamPF105512.3E-35256350IPR018289MULE transposase domain
PROSITE profilePS5096610.695538574IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-6547570IPR007527Zinc finger, SWIM-type
SMARTSM005750.0052549576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MFVEEESMSS PKDIGDGQAV DKQIIENRLD NNAVKAPEVG MHFDSLDSLF EYYKLFGKQE  60
GFRVKKKTSR LSIDGKLKFV SLSCSRAGKS QSNKQNFLIS NASKMECKAR VNATIFEDGK  120
CKINSVVLEH NHGLGSQKPG PDLCNKEISI DAQKNVELND RGGTTVMKNC QTVVVEAGSR  180
DNVPFLEKDY RNFIERAKRL RLGVGDAEAI HEYFVRMQAK NPNFFYMVDV DDNAQIKNLF  240
WTDARSRLAY EEFGDVVTFD TTYLSNRYET PFVLFVGVNH HGQSILFGCG LLSNADATTF  300
MWLFRTWLIC MSGRAPNAII TDQDKAIQKA IKVVFPNTRH RWCLWHIMKN LPEKLKGYRY  360
EQIKNTLLNV IYDSLTKEEF EENWRQFVND LNLHDNLWLS GLYEERHQWV PAFVKDTFWA  420
GMSTIQRSEC MNLVFDGYVN FKTTLKQFIE QYDNALRNKI EKENREDFYS FSKCIPCVTL  480
FEIEKQFQAV YTNAKFKEFQ KELMGKLYCE VSYVDEKEGI FDVSEIVFVG ERRKDVHFNV  540
HFNKENCEVK CSCCLFEFRG ILCKHIISVF MKFQIINVPA KYVLPRWRKD LRRCYTRVRV  600
GYDDFNYTPE AQRRHKLQQK FEEVADWAVV SNDNFSMLWN WIDEFQSRVK KQFMGAVNTQ  660
STSENS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893354.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
RefseqXP_024923569.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A200Q5J00.0A0A200Q5J0_9MAGN; FAR1 DNA binding domain
STRINGEMJ154170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-115FAR1 family protein