PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_015893083.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Nin-like

Protein Properties

Length: 941aa MW: 104872 Da PI: 6.2479

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015893083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	625	675	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_015893083.1 625 EKAISLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 675 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	614	695	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-25	628	675	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.43E-21	836	926	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.1E-21	844	924	No hit	No description
PROSITE profile	PS51745	23.7	845	928	IPR000270	PB1 domain
SMART	SM00666	3.3E-25	845	928	IPR000270	PB1 domain
CDD	cd06407	2.48E-36	846	926	No hit	No description
Pfam	PF00564	1.4E-16	847	927	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MSMEYYGAML PNSTYGNFPN TTSTTTTNAE EDFMDELLFE GCWLESSSGF NFMQPFSSNP 60 HPLVVDPWHY LPSFESNSAL SNMNPHHQIY QQDHTADQGS LTENHHENYN CFVIESSSNS 120 RSSGNGNGGH IGGSRLWIGP RAYPNPSSSV KERLMLAIGH LKECTKHMDV LIQIWVPVRK 180 GGKQMLTTYD HPYYLNTNCK SLENYQLLTE EDSTESVRLP HRTFLGKLPE WKPDVRFFQS 240 YEYPRVNYGQ QHDVRGSLAV PIFERGSGTC LGVIEIVMTT QMVNYRPEEY VCQALEAVDL 300 RSSQNFIPPN IEACDELYQA ALSEIVEVLT SVCKTNRLPL ALTWAPCVQQ GKGGCRHSDV 360 NYARCVSTVD SACLVIDLEI LGFHEACSKH HLFRGQGIVG TAFSTSKTCF ATDITAFSKT 420 EYPLSHYARM FGVHAAVAIP LRTVYTGSSD FVLEFFLPQD CHDPEEQKQM LNSLPIVIRQ 480 ACRSLYVVDD KEPEEVMQPI RETIVLSDLR LGKEESLNLG PPSEETSEKE SSWIAHMEAQ 540 QQGRCLSVLL DYQMEEPKEE LKGTTHWDSN QGGLPNGQVF TDFRQLKQSS GHKVSVEGGG 600 NSYSFGGHCS SGGRKAGRRR HTKTEKAISL QVLQQYFAGS LKDAAKSIGV CPTTLKRICR 660 QHGITRWPSR KIKKVGHSLR KLQLVIDSVP GAEGAIQIGS FYPTFQELSF PKFQESDPFT 720 SMKSSNQSKQ LNSQSESGLF SQGGTTKSPS ALCSQTSGLS VCAAEAKQHI TNINGISCTD 780 ALMAKDPVGM LKRDCSDGKL LACNLEETKI LPRSQSYKAL SKNQTLESLH PMLGSSGWNF 840 CDGGALRVEA YFGDEKIRFT LQSNHSFGDL QLEIARRFNL DDISTIDIKY LDDDHEWVLL 900 TCNADLEECM EIYKSSQSHT LQLSLQRAPF PNQGSSFGSS S

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MSMEYYGAML PNSTYGNFPN TTSTTTTNAE EDFMDELLFE GCWLESSSGF NFMQPFSSNP  60
HPLVVDPWHY LPSFESNSAL SNMNPHHQIY QQDHTADQGS LTENHHENYN CFVIESSSNS  120
RSSGNGNGGH IGGSRLWIGP RAYPNPSSSV KERLMLAIGH LKECTKHMDV LIQIWVPVRK  180
GGKQMLTTYD HPYYLNTNCK SLENYQLLTE EDSTESVRLP HRTFLGKLPE WKPDVRFFQS  240
YEYPRVNYGQ QHDVRGSLAV PIFERGSGTC LGVIEIVMTT QMVNYRPEEY VCQALEAVDL  300
RSSQNFIPPN IEACDELYQA ALSEIVEVLT SVCKTNRLPL ALTWAPCVQQ GKGGCRHSDV  360
NYARCVSTVD SACLVIDLEI LGFHEACSKH HLFRGQGIVG TAFSTSKTCF ATDITAFSKT  420
EYPLSHYARM FGVHAAVAIP LRTVYTGSSD FVLEFFLPQD CHDPEEQKQM LNSLPIVIRQ  480
ACRSLYVVDD KEPEEVMQPI RETIVLSDLR LGKEESLNLG PPSEETSEKE SSWIAHMEAQ  540
QQGRCLSVLL DYQMEEPKEE LKGTTHWDSN QGGLPNGQVF TDFRQLKQSS GHKVSVEGGG  600
NSYSFGGHCS SGGRKAGRRR HTKTEKAISL QVLQQYFAGS LKDAAKSIGV CPTTLKRICR  660
QHGITRWPSR KIKKVGHSLR KLQLVIDSVP GAEGAIQIGS FYPTFQELSF PKFQESDPFT  720
SMKSSNQSKQ LNSQSESGLF SQGGTTKSPS ALCSQTSGLS VCAAEAKQHI TNINGISCTD  780
ALMAKDPVGM LKRDCSDGKL LACNLEETKI LPRSQSYKAL SKNQTLESLH PMLGSSGWNF  840
CDGGALRVEA YFGDEKIRFT LQSNHSFGDL QLEIARRFNL DDISTIDIKY LDDDHEWVLL  900
TCNADLEECM EIYKSSQSHT LQLSLQRAPF PNQGSSFGSS S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015893083.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893088.1	0.0	protein NLP2-like
TrEMBL	A0A221I0T0	0.0	A0A221I0T0_9ROSA; Nodule inception protein
STRING	XP_008235979.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein