PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893041.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 288aa    MW: 32264 Da    PI: 6.0663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.4e-201964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll+++v+++G ++W+ I++ ++ gR++k+c++rw + 
   XP_015893041.1 19 KGPWSPEEDDLLKKLVQRHGARNWSVISKSIP-GRSGKSCRLRWCNQ 64
                     79******************************.***********985 PP
2Myb_DNA-binding56.65.8e-1873115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+++++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_015893041.1  73 AFTAEEDDIIIQAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 115
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51294261469IPR017930Myb domain
SuperFamilySSF466891.22E-3116112IPR009057Homeodomain-like
SMARTSM007171.1E-161867IPR001005SANT/Myb domain
PfamPF002491.2E-191964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-252072IPR009057Homeodomain-like
CDDcd001672.13E-162163No hitNo description
SMARTSM007174.2E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129420.4971120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2273119IPR009057Homeodomain-like
CDDcd001674.50E-1273116No hitNo description
PfamPF002492.6E-1573115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVQETPSMES SHRDADRVKG PWSPEEDDLL KKLVQRHGAR NWSVISKSIP GRSGKSCRLR  60
WCNQLLPEVE HRAFTAEEDD IIIQAHARFG NKWATIARLL NGRTDNAIKN HWNSTLKRRY  120
SSLVEDGGDT INEAPFRMEK KSTSPRTEAP VSIPAICYSL DSNSESDVSD SGVPVPVPLV  180
SSFQVFGPAA RTDLLLSLSK NGDLSPNLNN VNVNDNCNEP STLLTLSLPG NEPYELPNND  240
SASRREKTPE SEKNRLAFGS EFFTKMQELI RKEVRNYMTD LETNGGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40181193104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-401811957158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-401811957158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40181193104C-Myb DNA-Binding Domain
1msf_C1e-40181193104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893041.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893041.10.0transcription factor MYB44-like
SwissprotO231607e-74MYB73_ARATH; Transcription factor MYB73
TrEMBLM5VUC31e-100M5VUC3_PRUPE; Uncharacterized protein
STRINGEMJ004981e-101(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-70myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]