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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_015892819.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 264aa MW: 28527.6 Da PI: 6.2771 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 14.4 | 6.9e-05 | 150 | 189 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq
XP_015892819.1 150 KRKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIKFLQ 189
577888999********998.....8******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.103 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.6E-8 | 150 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.38E-6 | 150 | 193 | No hit | No description |
| SuperFamily | SSF47459 | 3.27E-11 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 264 aa Download sequence Send to blast |
MAENDGFDRD HLAVTAGTNF SQLLFADDDS SVVGLDVNQS FNFASSSAFS AAEKPPKMLC 60 FGNYQYNEDL VFSDTTRTSQ KSGVTCSDSS STSSSNRLSV NTLSKPNKKR NGSDQESVQS 120 TSAMTTYVMA SQKTSKRTKT ENPTTTIPAK RKEKLGERIA ALQQLVSPFG KTDTASVLHE 180 AMGYIKFLQD QVQVLCSPYL QRLASLPESE GGENGDGGKA RKELRSRGLC LVPVECTVHV 240 ANDNGADFWS PAMSNDVVSS STKQ |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_015892819.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024932852.1 | 0.0 | transcription factor bHLH113 isoform X2 | ||||
| TrEMBL | A0A314XJ72 | 1e-113 | A0A314XJ72_PRUYE; Transcription factor bHLH113 | ||||
| STRING | XP_008236390.1 | 1e-110 | (Prunus mume) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19500.1 | 2e-47 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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