PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892818.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 265aa    MW: 28655.7 Da    PI: 6.2771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-051511901155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_015892818.1 151 KRKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIKFLQ 190
                     577888999********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.103140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-6151194No hitNo description
SuperFamilySSF474593.27E-11151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-8151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAENDGFDRD HLAVTAGTNF SQLLFADDDS SVVGLDVNQS FNFASSSAFS AAEKPPKMLC  60
FGNYQYNEDL VFSDTTRTSQ KSGVTCSDSS STSSSNRLSV NTLSKPNQKK RNGSDQESVQ  120
STSAMTTYVM ASQKTSKRTK TENPTTTIPA KRKEKLGERI AALQQLVSPF GKTDTASVLH  180
EAMGYIKFLQ DQVQVLCSPY LQRLASLPES EGGENGDGGK ARKELRSRGL CLVPVECTVH  240
VANDNGADFW SPAMSNDVVS SSTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892818.10.0transcription factor bHLH113 isoform X3
TrEMBLA0A314XJ721e-114A0A314XJ72_PRUYE; Transcription factor bHLH113
STRINGXP_008236390.11e-111(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-47bHLH family protein