PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892614.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 380aa    MW: 41470.7 Da    PI: 4.7112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-103053451055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_015892614.1 305 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 345
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-14294360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-12304349No hitNo description
PfamPF000104.9E-8305345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MESMGVQGEW TSLSGIYTAE EADFMAQLLN NFSVPNEQDG DSSIGSLQTA SWPGHELTMD  60
MASGNNEGSN CTLEITNSNL YSFSSQGSSS YKYNTTNGSS ILYPTPHKML VTNNNCSTAS  120
TSIDFCMGLG DLQFTNSYLI GSGTDHYCLN QLGMSSDGDR EEDYGNSDKP ESVIPQQNLQ  180
VEKKSDMTES EHLMEVKVTT PSTKRSRTSS ENVQSDKAKT KSKKSKKLVS TSKNIEEESL  240
NGDQNGQSLS SCSSGDDSSA SQDPSRSGGV TSSTLSLNES VPLNSTGKTR ARRGSATDPQ  300
SLYARKRRER INERLKILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYA  360
PIAYNGKDIG LDLKLTLAKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892614.10.0transcription factor bHLH84-like
TrEMBLA0A3N7FV153e-97A0A3N7FV15_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09210.12e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-56bHLH family protein