PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892516.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 491aa    MW: 51580.1 Da    PI: 6.5069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.4e-07286311530
                     HHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                     h+++Er RR+ri +++  L+el+P+a
  XP_015892516.1 286 HSIAERLRRERIAERMKALQELVPNA 311
                     99**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-4279313No hitNo description
SuperFamilySSF474593.27E-7279327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.506281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-6283313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MQPCSREMPG MNSLLNPSSQ ISLQELQQQQ SQIQSSQMQQ HQIHNSHFEP TSHDDFLEQM  60
LSTLGPSSCS WADLNPAVNT SKAAPWDTIP PPLNGSAKPR DLSDETAPSS HENVGFPYDE  120
SVNLASKFRN HQISGGSKSA TATAAMLLHH QLMMSRGVAG AGSSGGGSGT GEPGLLQMPL  180
SLGNGEFDRS HNDVGDGSSF KSPTPGGDVS VQTLYNGFSG SLHGAGQVPN QPPHFQHPQG  240
GQMQAQNFGA PGPVMTQVPA SASSGGAPAQ PRPRVRARRG QATDPHSIAE RLRRERIAER  300
MKALQELVPN ANKYRENVNF DMFYFYIKME QVLSMSRLGG AAAVAPLVAD ISSEGGGDCI  360
QASANGGTMG RSTTTSNGNQ TASSNDSMTV TEHQVAKLME EDMGSAMQYL QGKGLCLMPI  420
SLATAISTAT CHSRNPMINN NNHPTNNPTL ASNGDGPSSP SMSVLTVQSA TMGNGGADGS  480
SIKDAASVSK P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892516.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892516.10.0transcription factor bHLH66-like
SwissprotQ9ZUG92e-76BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2P5F3C20.0A0A2P5F3C2_TREOI; Basic helix-loop-helix transcription factor
STRINGVIT_11s0037g00040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-42LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]